NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10248647

Scaffold Ga0335085_10248647


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10248647 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2139
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013198Metagenome / Metatranscriptome273Y
F051413Metagenome144Y
F069759Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_102486472F051413GAGGMTLTTMLKSRSNGKAGSLLVGSDVPAGTKSINIVVAGIREAPTDFGAPVIIDLKTPVYGKSAWAVNKTNLRTLIKLFGDDEQKLMGKKIRLDVISVRNPQTGEIVPSLAVSPRQTA
Ga0335085_102486473F013198AGAAGMKKRAGRKTHRRSRNSRSLLKTHMGRQSELAHDRSLHVLAAMRRDPSLLLSRAAKLQGVKPETVKKHFASSLRKKAGKFTVRKSDRHTATLYLPDTHGNPVSLSTRSSKERTQASNYLRDLGRYLRGQKDALAKWHGKKIAGFELLTAGRTIVGIEPALSEFSLYRATNGGAA
Ga0335085_102486474F069759GGCGGMKDQDPRRTARRNARRKNRFGSNNFCLFCGYSCLESLTQVSRRWLAANGVAAELLNRLLEDHHAHGEAHDPDLLVTLCLNCHREITEGLLREGVSMYPETNVHKLVALKLRASAVLLESLASSYRDSATLLEESDES
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