NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335082_10002331

Scaffold Ga0335082_10002331


Overview

Basic Information
Taxon OID3300032782 Open in IMG/M
Scaffold IDGa0335082_10002331 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20414
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002853Metagenome / Metatranscriptome526Y
F009917Metagenome311Y
F084509Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0335082_1000233110F009917AGGMFTTPLTVLVAALTFGAQLIVFLRWMHRRIGDDEIQRAFIRDLAMRHLPSIYHALHTIAERQGIQLDETPIVNFVDLRGGHRRI
Ga0335082_100023316F084509GAGGMPSYSNSIPPVCVGFGESAVVIASTDVIYPAPFKSAQIALAPNFSSGKLRCAVEIIFSGNPGTFAANLQTADTDADADYVSIAAGAIANAQMNGTWVARIELADLVAKFARIYIGTLPNSVTATAKISA
Ga0335082_100023319F002853AGGCGGMGRGAQETTRQKTDEQLAQLNALNQQLLGQQQALGNQVGAQYQSLASNPGYSAADKAAITGQSQGALSSVFDALQQSAMNRMARTRNAAGFGELTDELARQKSREEAGLAQQNHLNFSNTAYQRQLAGLQGLSGLYGVDASLLGRTLGIPADLLNTRASASRGSGFFSSLGSSLGGALGQVPAMFL
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