NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335082_10037033

Scaffold Ga0335082_10037033


Overview

Basic Information
Taxon OID3300032782 Open in IMG/M
Scaffold IDGa0335082_10037033 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5141
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004823Metagenome / Metatranscriptome422Y
F017965Metagenome / Metatranscriptome237Y
F020070Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0335082_100370333F020070GGTGGMPAPITYVRSASVALPSADRGRVSSVVAFGCVLVVIGASCFCASVFAQTSDSRTAEEPNKSWTATTDFKSDNLFPTRIPVRIIESHSQNGNRTIDDRSIQIQGVDGHLEPYQEIEKETLQLDANTVRTITRMFGRDVNGAKSLIQVTNEEKHNLPSGDSTVLRITFNSDLNGKLQPGQHEMVEIKTISKDVEKTKTTVMVPSINGGLAPLVKTLEVRKRGANDTVETEKSTWLPDLNGNWQISEIRKDVTKQEANHRITEERVSRPDAEGKLGEVSRVASQESEGASGEKRNIVETYSIDVPGSTRDGSLHLVERKTSTERSSSTGERATEQRVEQTNPGDPGSGLRVTVLVDGRMVPGPSGEQSTVTIRARDSNGKLGIVSVDTTKADRIPAIQVQTPAEKP
Ga0335082_100370334F004823AGGAGMYATKAINGVPAIQHDGKSVLSVCDQNWDFANWLCALLNELGHKSELLLNERDWEWRNPNDRAFRRPVQHAW
Ga0335082_100370335F017965AGGAMSETIGDPDALYLFACHLEWRTKRNLAAYQELLAALDDHDGDIRHLAESLLHRSSPRPERTATGVESW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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