NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335082_10104362

Scaffold Ga0335082_10104362


Overview

Basic Information
Taxon OID3300032782 Open in IMG/M
Scaffold IDGa0335082_10104362 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2805
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029879Metagenome / Metatranscriptome187Y
F057229Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0335082_101043622F057229GGAGGMNCTWKRHFERVLQEGEMFGLVFTTLMLIVVEGYFVYWLHQIQLPCLPLTASGFLVIPPWYREPRFEVTLLLTIAAGMLFSVCRGLWDLWRERDHGDSAEILIALRRRVNTAASVAALAGVNLALATWLR
Ga0335082_101043623F029879GGAMLTEFELRERLRKRRPTFPEVTVHQPATLQEMDAEFRAARQKRSDIGLTNHVLNLFLEPRNPFEPQRIRKPKMEIVVFGTLLTLVVIAVLAFNLAAPRPS
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Institute for Fundamental Biomedical Research
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