NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335082_10153887

Scaffold Ga0335082_10153887


Overview

Basic Information
Taxon OID3300032782 Open in IMG/M
Scaffold IDGa0335082_10153887 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2224
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012046Metagenome284Y
F015514Metagenome254Y
F017541Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0335082_101538871F015514AGGAGMHRNIARAYDYLRLEHARIRAACITILSQKDEDLRRQLLRADLDDPKHHDEMLLYEERLSRPQRRRVLDLNRYGRKIERIMDALLRL
Ga0335082_101538872F012046AGGGGGMKKPRVASHAASNYVPGGRYPGLQGKVVDWVEHQFEEGVLYIHVRFTDKTELSWRVSTRMTIEEADLASWTSGDFKQLRVFVRNERDRSQ
Ga0335082_101538873F017541GAGGMLPLFQQMVELNRSFDQVAAGLQRLQAVPFFQRDLIRHALSDIEIARVYANREFFDNFEKIVEDDAKWAYRFQRKFDQKLKDRDDIYLEVKTSEERRKRKGLAPRVVILPGWDMSDEDRYDERHAKQRSRTTRKKSQRPSQPRGARR
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