NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10000004

Scaffold Ga0335079_10000004


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10000004 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)599871
Total Scaffold Genes478 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)380 (79.50%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000036Metagenome / Metatranscriptome4352Y
F000279Metagenome / Metatranscriptome1383Y
F001520Metagenome / Metatranscriptome679Y
F008958Metagenome / Metatranscriptome325Y
F025870Metagenome / Metatranscriptome200Y
F030501Metagenome / Metatranscriptome185Y
F033872Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_10000004154F000279GAGMSQNIEHGAMEEVVLPENLLPLGSVLGQGVTALDLCMVLAKIFRVQYTEVALLRLEGGLLRFIFPDHLRTTGSIPLNGKAVAAHTAMSKKAEIFNNFARVKHASIFETIKPGAGESDEPAAPSPIQKLMSVPIMDRDSNVVGVIQVSRKGLDPKFAQDFSREDLHDLELAAGLLSTAPALLNS
Ga0335079_10000004243F025870N/AMTDIQIHLCERLKQLGFSRNSQMKLYGSQFDLVGDPLVISDEVVFVDAVERKSGQSCRVRIPLNIVRLATEQASHTYAA
Ga0335079_10000004367F030501GGAGGMKIRPFVAIGILATMLAGPGSAWAAPQCFSPFSGVYIMFEQPVTSTLGAVHGRSWGALASCAGLSSWPLVGSAHYSKADGLVVAFRVFTVDAATCGAIDYIGTLSGSTLSGPFQLFNQRTNFGNSGTWTEIPCPAPPEEPIKPVAGVDVNGNSTK
Ga0335079_10000004368F000036N/AMAYKETFWMACDSTEQLRAEYGPFHTRTEAEHEAKKLGFGYLLRYEHILGANEEIEEVRCIFVELPGAAPVGADAVASTLHTRCATCGESAAHDKGWQAEVWADIHEFEHSRHLVRLFEHSRGKGLKEIGDWRG
Ga0335079_10000004392F033872GAGGMQTWVIREHGFNGNIMLNSEPDHNYYSYSLWRARTGEHLFDGAAGDLAEAMESLHAHISFLSAGQNVE
Ga0335079_10000004447F001520AGGAGMNAVKFLFAAYIATWLIHGFYMGTLVSRFRRLRREIDELHKSAPTPHP
Ga0335079_100000047F008958AGGAGGMKLVKFEDVHGKETFINADRLNFIADYGSGTSELNFGGEESTVYVAMEVSAVAKTLLKATTEK
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