NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10004651

Scaffold Ga0335079_10004651


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10004651 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15779
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000885Metagenome / Metatranscriptome849Y
F002750Metagenome / Metatranscriptome533Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_1000465114F000885AGAAGGMSTAGTSSTTGSAHLEFTGMVVQIGAVASVVAGVVLSLRHWPAAVALIGGAVAYVVGRKLRAM
Ga0335079_1000465116F002750GAGGMLKWLHGVLQTRYVGMLEGEVLRLRAENRALMNSLLGTAGFPPVEFPEMAKPQPLPRLRKRSWHQLQAWREAASTRDPDEVSHKTRTG
Ga0335079_100046517F000188GGAGMGVKAELAFDVCWDVYRMAREVLESKRGLSALKHEDISKFLWRPDIRPRLTEWVADFTLAGEDALDGPEWASRMVLFRVYYLGLAPYERTRHFLGLTEHSWVQWTEVIRQRVGKVLLKRGMFPPRRYFREMS
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