NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10006403

Scaffold Ga0335079_10006403


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10006403 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13476
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (73.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002288Metagenome / Metatranscriptome574Y
F002929Metagenome / Metatranscriptome520Y
F003851Metagenome / Metatranscriptome465Y
F026325Metagenome / Metatranscriptome198Y
F036259Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_1000640311F026325GGAGGMMTDPAFAIKREVHQLVDRQIEKLRPSSCLTTSGLLDCRVRSQKIIVLYQELDQMRRMSFKVQLRTAS
Ga0335079_1000640312F003851AGGTGGMKHRKLAAAACRTIDEDAKRVLRALEEATHNHVNTNDPVMEQLKQCPEASKVGEILGKAFDSLKYAQDESEIGDRYLPPAGTLIPPLV
Ga0335079_1000640316F002929AGGTGGMSQSFRAVKEIWNVHSSCFIEPEKLIVLLHDLAARVGTASDEHEYGDKQAVWLENGRKVLDYMEADERFSVASCHDSMEEQGIAVNRNDLITLIDNMRSLSKQWRSSIGKHGELLFYIDA
Ga0335079_1000640319F036259GAGMFGAHRIGFDWKEIAEVLHLTRAVARPTFWSEIRRSRSKSVAAQPPATVIQDESDPDNLKLGKPRASR
Ga0335079_1000640320F002288GGAGGVCVDGPGTLTAIRIQPPEGSSMGEADGVHKRRMFRWPKEARELVREYKERTSRSQEHTETGRGMLVTKLAAISGNPRDACLRFLRELGVNHKRAYREWTKPEQQRLLDLITAMPVEEAAKILRRPAGSVRSMLHRLGIGGTTGREWFTKFSLSRALHTRPDEIQKWIDMGWLSSRALTAAGTKANVIHADDFCQFVKEHGRAVASRRLTYEALWFVQNYVFPPSHAELLSVRGTYKRHDAGDETDANTESQSACGSEEDGGQEG
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