NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10240902

Scaffold Ga0335079_10240902


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10240902 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1992
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003851Metagenome / Metatranscriptome465Y
F015067Metagenome / Metatranscriptome257Y
F026325Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_102409023F026325GAGMFTELRAGQAVGYELQFPRRNRMMNDPASAIKRQVHQLIDLQIETLRQPSGLTASDLSDYRVRSDKITTLYRELDQIRRGNFERPLRRAS
Ga0335079_102409024F003851AGGGGGMNRREPRPSSRRSIDKGAKRVVRALEEARHGRVNTNDPIVEQLKQCPEAFKVGEILGKAFDSLKYPQDGAELGDRYLPPAGTVLPPLV
Ga0335079_102409025F015067N/AVIGLPLEVSFPRLKGIRWRYCTRWDEGPAAVLGMSLLRLGICCPNDWSGSAVDFVERGFRRFCSQNRVADAKRVWVGDLRITDSLFELTEQERNQVDAEREGAADHLYLVGDYEAAASIPIGATLTRLEAEHADLPAAFYEVFTKNLYKWMRVYDYIDAQEHAETWMEDLNDEELEVSVYRKVDLEIPACIKRHSKPLKYGKARKLLERIEPQTSVARELIRHVLDMDTHGRGHEHAWPGQISEKEVPGI
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