NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000003

Scaffold Ga0335078_10000003


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000003 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)817340
Total Scaffold Genes685 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)445 (64.96%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000595Metagenome / Metatranscriptome999Y
F000969Metagenome / Metatranscriptome818Y
F002981Metagenome / Metatranscriptome516Y
F005420Metagenome / Metatranscriptome401Y
F011701Metagenome / Metatranscriptome288Y
F046546Metagenome / Metatranscriptome151Y
F048481Metagenome / Metatranscriptome148Y
F101589Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_10000003163F002981GAGMPDPSSSTPGTPSTPSSPATPVTAAKGPTINIGEEFGTAKKNLPPAKIVLIAVAAVVVVVLIASFLKRAKPQAAGSLDNVAAVEIPGQGSTMVALTFTLRNTSDKILYVHSLQGKIKTGKGESSADAVSAVDFDRYYQAFPALKNGAQPALSPEAKLQPGEAVTRTIIVAFPVTLDAFNQRQSTSVVVWPYDQTLPVVLTK
Ga0335078_1000000323F046546AGAAGGMRSVKFLGLFLCILGVCAIATAGEKNNLGIRDVSRITLADATRVGTALLPAGDYVVRHTMEGQEHIMVFQRSGSKTPQAKVKCTLVPLEHRADQTKTVFTMNAANEKVLQELVFRGDTAKHVF
Ga0335078_10000003347F000969GAGGMINDDVVKCPLCGGFTHIEKPELLSALRDPRLREQIEKYIAELLQSPVDELSTVSATQSGRDFQKDVHNWNPCVPMWRRSPKE
Ga0335078_10000003403F000595GGAGMDGLTGLAAIVMIFGMPTAALAMYTFYRVRKLRTEERLAAIQRGVSVPMEPELSQAAHSRRSGILLVAGAVGYMLAFTILARFEPDAIEAAAFGAIPFTLGLGFFIDSVLIRRDARAS
Ga0335078_10000003424F048481N/AMGLPPEGALNMAAWDMIRDLVSADPSLNEAAWENLRGVVALLGSGEDGAVPISGAKYRRA
Ga0335078_10000003434F101589N/AMNWIAFLLLAIVLAFCGVVYAGCRSWPTMSPRRRTVGALLLMPHFLMIVCIVLSLLCGHPPQGSPCFNRQFACAVLVVFILPLPAFAGTVGALVIFLRSRGAS
Ga0335078_10000003453F011701AGGAGGMKFVRPTRAGLACALFVGLTLAVVTASANTGQKFSGYFDVSGVQEQGDMVQLTLHLQLFNHGSTDLKSVIVTLMDNSPVMTLRGNFQPVQVWKHQQFIEMSQEFTVTKREYAMWTAAGPVAPNLIIIYADGNGKTWQKGVQISHRGLVAADNR
Ga0335078_1000000379F005420AGGCGGMKHWARAIAGTVFFVAIGFAAAGLRAQSAPPTYFANSFRQGETRITEEAFDVKLTPDNATYRERIKDSAGNDRYELTITPQGPEGDARITSWRVRLGDLHHSIYNNILLADQQPTAEAKDNLWWLNPNPFGPVPIRAKRIMKVDGFYVVLQVKNLHFTPLDSPYLDSMEVHFAFSNSDPRNAGH
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