Scaffold Ga0335078

Basic Information
Taxon OID	3300032805 Open in IMG/M
Scaffold ID	Ga0335078_10000009 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032805 Open in IMG/M

Scaffold ID

Ga0335078_10000009 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	400338
Total Scaffold Genes	451 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	281 (62.31%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

400338

Total Scaffold Genes

451 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

281 (62.31%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008445	Metagenome / Metatranscriptome	333	Y
F022088	Metagenome / Metatranscriptome	216	Y
F045036	Metagenome / Metatranscriptome	153	Y
F052121	Metagenome / Metatranscriptome	143	Y
F066275	Metagenome	127	Y
F069898	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_10000009157	F066275	N/A	MAAVNEAHFGEIERTLLCISGARQRAERALKTISKDGAEPHLIEALEEAERELDEIQRRLMQHTYFAVPKEQLTL
Ga0335078_10000009167	F052121	N/A	MVGSAPLWQRAIVLLPFYIIGGGLVLGVFILLGRALVDSIRESGHKRWVLAGLGLLVVAVVVLTYLGVNLPKEE
Ga0335078_10000009221	F069898	N/A	MEAVVRAWSKDLNDGDNAAVARLFRLPATMIQDGFAFRFATVRGLAAFHASLPCSGRVVSITVKGRNAVAVFRLGDRQTSKCDAPGTLAAARFTIVGGKITVWRQVPPPAQGPVA
Ga0335078_10000009328	F022088	GGCGG	VRKYPRVPIWRWVMWSLILAVALVVFYGLFTPVWFTLRSVAWLAEYQARRRR
Ga0335078_1000000973	F045036	AGGGGG	MKFRLTLTLAAAVLAAVALGGGASANHRHGPNQPNGQLYQFSGELLAAPGSTGTSASVQVETGNHAALKALIGQSQDQTFTLGATTAVTIWSHGVPHVGSIASLQQGDYVTLKVRAPYGSAMQTIDGTAAAAVADHGAPGNGGQPLWLFIGTVAGPQSNDEINLSVTSGNWKALHAMLGQSLNQTFTYNDGTIFLLWQGRIPTVIDPSQLKAGDAITVRIRAPRSDSLSQVEAVAAAHVGDHEPAPPPEE
Ga0335078_1000000985	F008445	N/A	MARFGSTQFIVAALIDAVVASAVSFHAQRNGIKHQLAWASAVFLFLAIALPLYWLHVRRVRRARGAL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335078_10000009

Overview

Ecosystem & Geography

Associated Families

Sequences