NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000038

Scaffold Ga0335078_10000038


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000038 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)248952
Total Scaffold Genes234 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)176 (75.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000078Metagenome / Metatranscriptome2550Y
F001220Metagenome / Metatranscriptome744Y
F007441Metagenome / Metatranscriptome351Y
F011862Metagenome / Metatranscriptome286Y
F014534Metagenome / Metatranscriptome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_10000038123F011862AGGAGGMLRRTFLVTLTALTVSAAAAQSSPQRAPEPSRESILHESIVRMVEQVKRADYDGDRAALRRLHDELPTSAAHKSLASRVLYWRGFALWRRAINGFNETPAPTDLETDLNAAIADFQNAIAQDPANVEPKIGEASCVGYLMYVNRKDQGRAQELLQRVIPLTKELQAEAPDNPRFLWIMGPVRWSTPPERGGGQDKAFEIYNRALEIVRKQKPQSDPLEPSWGEPELLMNRAWSNLNRTTPDLKAAAEDAQAALHLVPYWHYVRDILMPQIQAAQAKTH
Ga0335078_10000038140F000078GGALDNLYCLRCNREIETGHKSVAVYMFAQTVGIRPRQKSAAQRICFCPQCSVSLAMGPPPEGALNIAAWQMIRELVGADPALNEAAWETLRGIVGLLSATGTDGDSRHSAAGGYFEF
Ga0335078_10000038194F014534GGAGGMYGNYLVLCGMVWAQFGAQDAGLELIRAMSSGDQEVRVLARTMLEQAQGGSKELIGQALAEAEISVSMARSCGFDQGQPKGWNNSTWFAPASA
Ga0335078_10000038227F001220AGTAGVTRNCLWGLMLAASGIICAQEAPETQPHLLEVLADKDSRYKIPGLSQPAVTVKAGEPILLRVTARKAKSWNRDGSIHGFSLLRAKDRSKVEGWDLLLKPGTQEFQMTAPQEAGEYVVVCTVVCSEDHEGMRMKFVVVP
Ga0335078_10000038228F007441AGGAGGMIRIIVTHAICVLGLTFAAQAGDSEARTFYGEISDSQCALNVHSLTKSHQEMYKSKSGAAGKTPASCALYCVDRMGGNFVLASKAHVYHLDNQGLARRFVGEKVKVQGVKDAKPDTLHVLNIEKD
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