NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10016141

Scaffold Ga0335078_10016141


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10016141 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11078
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028400Metagenome / Metatranscriptome191Y
F053110Metagenome / Metatranscriptome141Y
F086481Metagenome / Metatranscriptome110Y
F100211Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1001614111F028400GGAGGMPNAKRNRRARSRREPESAGIPSCAIWMLRELGPILSRLKPPRTRSAKHLRNAAIELLEAMRVLLDESIEWLRKEGRSEAELKRIHVSG
Ga0335078_100161412F100211AGGAGGMSGMTRKWFGTGALSLGLLLATGIPAAAKNSRTINVDHAIVLQGKNLPAGQYKVEWQTHSPEATVNLSRDRKLVVTTEGRIEQRDKTNYCDSVVYDTAPDGSMTLREIRFARSNKVLVFN
Ga0335078_100161413F053110AGGAGGLKRNFRRYFDTGILVLGLLVAVSIPALAKNSGTITLLHDAGLHGKTLHAGTYMVEWKTHSPEATVQFSQRFAVALFAEGRVERRARRYEQNAVVYDTAPDGSLFIIEIRFANSNKVLVFD
Ga0335078_100161414F086481AGGGGGMAVRKHLGILVVSVILVLAYGIPGFAKNSRNIAIAHPVVVSGTTIPAGQYALRWQAQSPQASVEFVKDKKIVASAQCKFEDRGKKYSASTVIYSTSPDGSNTISEIRFAGSSEVLVFNE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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