NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10253466

Scaffold Ga0335078_10253466


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10253466 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2400
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012158Metagenome / Metatranscriptome283Y
F094270Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_102534662F094270GGAMPGNSRAIVAEADQRFPVRIVIKVPPGGIGTRYTEMTEWLDENCGIRGWSITPAGTRGIQNDAIAVYMNGPTCAVAFVARWCVSGDPPGFYEFRSDEPERRIPAPRRKTSYGRCRWNRWRSNKYVLTRGNLPFQCSVGA
Ga0335078_102534665F012158AGGMTDIVQGQRLPGGFILIDGTRWAVRQQSVAIIHDADECRDETLVHLHGGHVVRVPCALDEVLGWFA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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