Basic Information | |
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Taxon OID | 3300032805 Open in IMG/M |
Scaffold ID | Ga0335078_11017159 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 979 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Florida | |||||||
Coordinates | Lat. (o) | 26.5065 | Long. (o) | -80.2537 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003851 | Metagenome / Metatranscriptome | 465 | Y |
F026325 | Metagenome / Metatranscriptome | 198 | Y |
F067465 | Metagenome / Metatranscriptome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335078_110171591 | F026325 | GGAGG | MTDPASAIKREVHQLVDLQIETLRQPSRLTASDLSDYRLRSEKITTLFHELDQLRRAHFERPLRRAS |
Ga0335078_110171592 | F003851 | GAGG | MKQRKLAGASSRTNDENAERVLRALQEARHGRVNTNDPIVEQLRQCPEAFRVGEILGNAFDSLKYAQDGGELGDRYLPPAGTVLPPLV |
Ga0335078_110171593 | F067465 | N/A | VIGLPLEVTFPRLRGIRWRYCTRWDEGPAAVLGMSLLRLGICRPNDWSGSAVDFVERGFRSFCSQNRAADAKRVWVGDLRI |
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