NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310342_100008845

Scaffold Ga0310342_100008845


Overview

Basic Information
Taxon OID3300032820 Open in IMG/M
Scaffold IDGa0310342_100008845 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7112
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.8644Long. (o)-158.9436Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024572Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0310342_1000088453F024572GAGGMSASPVTPALRDRLMTAFRAYLCEKIDFVPFQHQAAWWASTDGQVLGPDDTGPHTMTVRLPSRRVVARTITPRPQGRARVVADLGAYKSGKSAGAGIWAAAFAAVPGAVVYLVGNEYDMCAPEFEYLLDALCAERGLGQGYRTLQNRPKDGRMWLELENGARFEARSWERAESLKGKEVDAYVYCEAYQLPGIECFTSVAQNLRVREGYAVFPTTPDRPWVQTLHDHGHDDPAFPAWVCHCGIPASVNPYSFDQAAMDRDQHLLTREKFAIAYLGTLGDYLGRVYRYRRGERQITPTTHPACWRDPTRGMTRANFRLPEDWTVTLGADTGTYCAAVAVAVSPTGLAVVLDEWTNYRYVAGLPELTEDGSIRTWTAGLAQMAARWGTRPVAWVDSNSQFKQECRRAGVSLVGNRHGREARTEAARAYFQHDQILLAPWVDLLPYEVESAQWPDQATSAGRFARLKVNDHLLDCLEHVLSRHPRGGQPRPAPPVPDLGSVQWYGSPLRKRTPPTAGDVHLGGS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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