Scaffold Ga0310342_101439786

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310342_101439786

Scaffold Ga0310342_101439786

Overview

Basic Information
Taxon OID	3300032820 Open in IMG/M
Scaffold ID	Ga0310342_101439786 Open in IMG/M
Source Dataset Name	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	819
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location Name	Pacific Ocean: North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.8644	Long. (^o)	-158.9436	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062152	Metagenome / Metatranscriptome	131	Y
F076483	Metagenome	118	Y
F084713	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310342_1014397861	F084713	N/A	MPKLMIEKIKDKKVYGKDMYKVVKLIDSHRLSLLETQFDEPSMLRYIQSLPNSYRYEIKN
Ga0310342_1014397863	F062152	AGGAG	MVGAHYMNELVNHINKLNQQTRDRGAVGFLTNDPDHWAEYGVYTIGDFQVYLEREHERNMYKNSLGE
Ga0310342_1014397864	F076483	N/A	KTKLGQIFRTATFVDRITKIRTLQTFLNDTTLDIPLMRRKVTELNMRWILRNVKVNNSEHINLNKIIKLIKEII

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