NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335080_10000032

Scaffold Ga0335080_10000032


Overview

Basic Information
Taxon OID3300032828 Open in IMG/M
Scaffold IDGa0335080_10000032 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)154967
Total Scaffold Genes136 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)108 (79.41%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000136Metagenome / Metatranscriptome1961Y
F000870Metagenome / Metatranscriptome851Y
F015624Metagenome / Metatranscriptome253Y
F051484Metagenome / Metatranscriptome144Y
F077661Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0335080_10000032120F000136AGGAMAKAKLRILYGEGDGEVLAQQAPAFEKAGHSVQKAEGRKNVEESLKKSAFDLVILGSSMTRNDRHHLPYMVKKASVGTKVLVLHADGSRHPYVDACVDTGTSVESVLNRIEAMKIAGAPQAAAAGAGK
Ga0335080_1000003274F015624N/AMKAENRKIFDEEYRVLAVESQRLTIQGVSSGEVLTIVTQNPELPLTAADYPPGKLISLSDPISSQPS
Ga0335080_1000003281F051484N/AVPDIGAGTVANGVYRNRALGLTCKIPAGWVLRTEEMNARSEESEDTQVSQTPPDPGHPSSETVPKSAASDRDGLVLLAAFSRPPAAKGEDVNSSIVIAAEKVETYPGLKEAAQYFGPLTEVAKAQGLTADEDPYEIQMGAKVVVRGDFHKDVGSRVMRQSTVVFLAQGYVVSITAIGGTENEMEELLDGIEFVAAAQKK
Ga0335080_1000003287F077661GGAVSRLLVVTDNRSKKTDARRRGRATLRWVVRLVLASIAGAWLFLYIDSVHQRRRAEAFLADLKSLDFSTAGFPEVRDIMIRNGGTTWKRRAQDTCTPRDCYFALDIKSQLPRIPLMGRKAIFLYTILPYIGVRSWVFRASFEVRDGKLYEGGMGVFEYRMKRVSWNVYWLVPLTYGVETQRDAASFKNGPCSSQEYQVSVSHGVIHIPFDGLETCVVQSAGTSVKRAFDVHLRCLNNPFRNCRFDDLAPSAWADYLAKGGTSSPDPHQ
Ga0335080_1000003294F000870GGAGVSYGNGDQRPLQEAVARGLIWTSDRTFEGWTCSQCGWNYPLPTLLSDADARTAYDRLAAAKFREHKCAEHAARLMPAEGEFTSHIKKLISQGFKPKDAVELFLQEVGLEYRNDPKALARAKTEGEDFLRRLKAGLI
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