NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335080_10000033

Scaffold Ga0335080_10000033


Overview

Basic Information
Taxon OID3300032828 Open in IMG/M
Scaffold IDGa0335080_10000033 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)152437
Total Scaffold Genes142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)120 (84.51%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000036Metagenome / Metatranscriptome4352Y
F002979Metagenome / Metatranscriptome516Y
F060249Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0335080_10000033141F060249AGGAGGMNCYEIQESGFTGRVWPVHQFASEFYQYSVSSDAERERLFDGAAGDIAEAVSTMQAHIRFLSCGGAA
Ga0335080_1000003326F000036N/AMAYKETFWMACDSTEQLRAEYGPFHTRAEAEIEAKKLGFGYLLRYEHLLGADEEIEEVRCVFVELPGATPIGDERPHVTLHTRCATCGEAAAHDTGWQAEVWADIHEFEHSRHLVRLFEHSRGQGLKEIADWRG
Ga0335080_100000337F002979GGCGGVKTARKPEKAKQVPHPRMLLVPCSCGTTFAVAEHYDRQGTAWSRYLICPGCGKRHDPKNRLLQMGFHPEGYWKVDEC
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