NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335080_10002646

Scaffold Ga0335080_10002646


Overview

Basic Information
Taxon OID3300032828 Open in IMG/M
Scaffold IDGa0335080_10002646 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17920
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006115Metagenome381Y
F012295Metagenome / Metatranscriptome282Y

Sequences

Protein IDFamilyRBSSequence
Ga0335080_1000264618F012295AGTAGGMRTSTIQTESFITDWQLDIADEAPSRLSGPDPSIDDPVNDTGLGPRRGDLQLSDEFACLVRLICEGNGEFS
Ga0335080_100026464F006115GAGMIQPLRAVHGRAFVALSLVLPAILLLGLEARHPQSNLDTHAANAADTGNTVRQSSTLWQKHSIQSRFYSKADRPQDIYLVLQPVQELNEPDVLLYWDTKEPQRNVLSAEAQLLGAFSTGKVFRLPLNERRAGYLVLFSAAHQTVLDTASAETLP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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