NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335080_10019896

Scaffold Ga0335080_10019896


Overview

Basic Information
Taxon OID3300032828 Open in IMG/M
Scaffold IDGa0335080_10019896 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7234
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F006758Metagenome / Metatranscriptome365Y

Sequences

Protein IDFamilyRBSSequence
Ga0335080_100198961F000512N/AVGPFVFCEWKRSPQRAQREAELAESLAADMVRVMRERHEAPEGVAARLAAAGGLNKYGEANYRVVWGWNRLGWIGGKFEDRDEQGNLIREVVELREEPKYAAVNRWHVERWVPPEAYGSPRTWYAQTVESTDGKSVPALGPYPERGEYEHCFTIEGAHGEFVQLTPTIVERVAQAIEWSRRMPRAVQRAGLYGREERRERKYEEWALDLLDDAMPALHGQEFVTVK
Ga0335080_100198968F006758GGAGGMNGQSEVVSLVNISAQKWPPRQRTYFGSLEIASPGPGEAYAITAVRACKSVMDLGDKHTTEFPISARDVAEDLVREINGDSGEGSFHGVFLAEGAEPTQEELRDAREKLEAFQRKLVATADLEWERSHNPMFITDLERRAARELK
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