NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10000003

Scaffold Ga0335070_10000003


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10000003 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)555086
Total Scaffold Genes483 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)403 (83.44%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000043Metagenome / Metatranscriptome3655Y
F003145Metagenome / Metatranscriptome505Y
F018220Metagenome / Metatranscriptome236Y
F024035Metagenome / Metatranscriptome207Y
F031275Metagenome / Metatranscriptome183Y
F062108Metagenome131Y
F094037Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_10000003158F031275GGCGGMMAAFILAFSLLTLLMFFVSYCRSLTASSLQKSLTEEVLDVTGIQAKASGRDYTRVIQLLHLCPDRHEDRSGLQIVGTYYSFLNLLDNLFAKLSPAVHDWAEEERAGCAHFAAVALGRRIALNREMLAQQAEL
Ga0335070_10000003253F024035AGGAGMKKKLVLCLALVLMSCLTAAAQEAKMQPLTFWYEYTVNPGKESQFLDLVKTVGAPVRDKLMADGVVLAWGVQTPLLRIPGAATHQIWYMVADWSGVEKIDGAMRAQIMKLDEEGMKSGTTKKGGAPPAGVTARMMEIADVSKTHDYVTRDLVFVAGHGDMPATTLPWVRYNFVKAKPGKGSELRKAWEKYNKPVMDKLVADGVVMAFGFAVEDVRTTGDFTHYAWYATRELGSMEKVRAAFMADRDKRSQEEQDAISAAFAETLDLDASRSEMDHAVIFKVPGMK
Ga0335070_10000003352F003145GGAMLAREAYLDRVSTEVEEVASRVAELKGRFAKQKVSVKLDHYWELDYVRTRFAEFKRRIHQLEDADDPELSRLQENVDIAWKDLMQAVDALMAALR
Ga0335070_10000003379F000043AGGAMLYQLGWTTLPGLRGLSVSEFRATPTAAPDNQKGVAVDLATEADRDAFLQHLEEFFAPRRFTNAADAFDTVKAYVLESAAKR
Ga0335070_1000000340F094037AGAAGGVTSGPTCRCLLCRIEKQLAGELSSSIVRYEAIRGYAANGLRAFDSPFQLLSHLKATQAGPSSDDLFRELLAARAVEPQFVETLMIVAFIPVLHGTVRRIAKQQLRLTRADITQQALSVFLQVLRSEQIAKRQSHFAFAISRAVKRQLFEWAGREGAVHGPGREEEAQVPLPLLDDELMERHAVLRHFLHRCIVKGLLGDAELDLLIQIKLDGNTGEEIAESNSTTSNAVRQRMKRLLAKLRRLAGTAHLRNCAAKDSGRTKTH
Ga0335070_10000003453F018220GGAGGMQKIFRCKECQRGMRVVGSTGLGKEIERPVLCPYCKKKNKVKWPRGDTFNVQRVGTR
Ga0335070_1000000354F062108AGGAGGMPIVKKQPAVLTREVRMEEPVSVLLDDYAQFIESSPDHVVNAVLKKTLWRDQEYRKWREQRRSRGDGQAERTSKS
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