NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10000513

Scaffold Ga0335070_10000513


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10000513 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43172
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (88.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F029198Metagenome189Y
F036885Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_1000051321F036885GGAMNRWGGNAMADKKDRERVIAEVTLSHLIRLADEQGRPVSRQQALKFLNEEGQAFEMWKHMMQAAEEFIAVSLFRHSVGLGEHRQFASRR
Ga0335070_1000051325F001596AGGAGMSWFHASTAPVDVRNHASPAEIVACFQDQRQLLGKLAFLITGDQVTAEQAIVAACEVTLRGNSPFHDWLFEWAKAATITSAISQRAAAIRLCGAEYKARPCNHAEHLLQADAEERAASLNRMLRADGQRVIAELDPLCRAVLVLKVAIRSSIQDCVIRLNVSRAAVLAANCRAMAWLHDCQTTPVETISPLQVPPDNAGTGSGLEQRNKAHIPNRTNHFARIS
Ga0335070_1000051330F029198AGGAGMETESYSKAVRVEGEVIVLHCWACGTAHCLNLELCAPEELAHMVCSSSNCRMSMFLVNELTVDNENNKPTTKSALGVPFAALSRFWK
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