NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10001343

Scaffold Ga0335070_10001343


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10001343 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28382
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001102Metagenome / Metatranscriptome777Y
F002181Metagenome / Metatranscriptome586Y
F020066Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_1000134310F001102GGAGMQSSSKKQVDVTRLKADVSAAGVEVLSAHCATDRVRLQYSPQDIVAFGERTTLKKAIASSQAVYRFFALIELQLHQADGSDR
Ga0335070_1000134322F020066AGAAGMGVSISRSCLSWALSALLPVSSLGQALPEKPTGAILHAQGGVWVNGYEAHDSSAIFPGDTIETKPGASANLTLEGSTVLIAPESVTKFQGDLLELDHGGVSVGTARGFKVRVNCLLVVPVVNEWTQYVVTDLNRNVQVAAHKLDVNVQHEQGRGKETPAAEASQQRASVHEGEQKSYDESEVCGPAARPTGAMSSISPKWIAGGAAGAGILVWLLIHGGGSKTPASPSSP
Ga0335070_100013435F002181AGGAMASKPEQDPELPSRLQKTNEELKQLQDSVKTGMINVKVLMDFRVASERARQASVAVQRWLESQGKGNDPYQLMNEVMRQRVEMTTQLVKDVARDLEALDLDFDTPGLPALNQAVQTLAERLSKLFPAKP
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