NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10001572

Scaffold Ga0335070_10001572


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10001572 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26345
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000737Metagenome / Metatranscriptome914Y
F001289Metagenome / Metatranscriptome730Y
F001499Metagenome / Metatranscriptome682Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_1000157224F000737AGGAMPTSVLNGHRGSRVKLGGSILALVLLENGRQVRARMNQLSVNGGLLSLERPLDEGIRVTVLFHLGSTTVRCVGNMLFPMWATKGCLQPFRFIDLPEASRARLATELEELVRAGAQEEEE
Ga0335070_1000157225F001499GGAGMEHIHPATVRRFEARPGQPCEFCRELDPQFLSRRLVDQMVTANRKQTASAHLTEDGYVRHRMLEVRQLTARMPRSAA
Ga0335070_100015729F001289GAGMKNPYDVIRIKEQEMIRVRKEMEALRIAAKLLEAVDPLANNTENPPKMSRVVEMP
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