Scaffold Ga0335070_10003107

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335070_10003107

Scaffold Ga0335070_10003107

Overview

Basic Information
Taxon OID	3300032829 Open in IMG/M
Scaffold ID	Ga0335070_10003107 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19290
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5008	Long. (^o)	-80.2398	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031240	Metagenome / Metatranscriptome	183	Y
F052920	Metagenome / Metatranscriptome	142	Y
F105715	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335070_1000310711	F031240	AGGAGG	MQSQTNESHPGATVRLFLAVVNQAIADVLENGKEAEEAERWLLSKDFDILDRFFACPAMPVEARLQKATP
Ga0335070_1000310712	F052920	GAGG	VKYQAISHVIAACTAPFPERTDVHWETTNLQVWNAREGAAEQHELVYEVSWVDELGTWRRFLTSRRKVN
Ga0335070_100031079	F105715	GGA	MIRAEFIQRNEGRALKLEGRLAGAWAVQVKSLLSRHFVSHGFLVDMSEVTYVDPVGEQLLTWLRDLHAKFVAETSYARDVCQKLQLDLQEKETLTGLSRQRIKLLRS

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