NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10020498

Scaffold Ga0335070_10020498


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10020498 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7640
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001021Metagenome / Metatranscriptome804Y
F002363Metagenome / Metatranscriptome567Y
F010868Metagenome / Metatranscriptome298Y
F015253Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_100204981F015253N/AYTQSQPNLLPKKASRLLADPKLRQFAVGSCYARNSAYPTGIYWIAVLLN
Ga0335070_100204984F010868GAGMPIPTESRNSEPSQPTAAEHVAAASQLLKALQEKIGEHPEIGEAVNRLEMALASLGVQTGGFL
Ga0335070_100204985F002363N/AMNNLGVCLLVQLSLAFGVAGLLWPEKLRPIFDVLMFPWNASFRMVRIHSLAAVGVSLIILVRLLAIAF
Ga0335070_100204987F001021AGGAMKKTMVLTLFSVCLSFAAGVALAERVHDWQDLRKAHDHVQEAMREMDRARAANHYDMAGHGTRAEQHLRAAEHELNECIEAARAAR
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