NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335081_10003163

Scaffold Ga0335081_10003163


Overview

Basic Information
Taxon OID3300032892 Open in IMG/M
Scaffold IDGa0335081_10003163 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25876
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009471Metagenome / Metatranscriptome317Y
F011011Metagenome / Metatranscriptome296Y
F022165Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0335081_1000316313F011011GGCGGLGSGILCWFLGGTLATPLRQGTLFSLDGSRYALMAFLLVPALILAVVALFWVPPRLSGGGPLPEGRRWRLALVLFFLAAFAVGLAR
Ga0335081_1000316320F009471GGAGGMAVMSEPATESEHRNRIWFFPHKFWQHTKDMPKDEAANLMAEVESYAAVGDLQALSKYPFVFVGDPYKRREKNSAA
Ga0335081_100031637F022165GGAGMQSENDGVLCPLCHGHGHGRKETLVVRWRSREFEQELQKMCDEAAFGSGGGLEVPFETQEPVYSNESD
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