NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335081_10058773

Scaffold Ga0335081_10058773


Overview

Basic Information
Taxon OID3300032892 Open in IMG/M
Scaffold IDGa0335081_10058773 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5973
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030585Metagenome185Y
F071543Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0335081_100587732F071543AGGAGMRQTAKLEIVWRNSKPPRRQQRWEQINLLSGTGHYLVQELVPTSIGSFWTTTSSLEVAPGGRAA
Ga0335081_100587733F030585N/AMSFKSAVDTFFLMLSIVGASVIANAQAQAAERASLASEQYRLLVDEFADGAVHVAYAKRFVQVHEASLTGRQSQQYSHILVAYTRQLAAVRRAGVSAQSEFWNDVRAYSSSMIGAPGVPIPGRKTSKYWVTTGSESEDREVRRIVSLELDEARSHIQTAGYSPSGIVPDCRTASHELITQAER
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