Scaffold Ga0335081

Basic Information
Taxon OID	3300032892 Open in IMG/M
Scaffold ID	Ga0335081_10083703 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032892 Open in IMG/M

Scaffold ID

Ga0335081_10083703 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4815
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

4815

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F008269	Metagenome / Metatranscriptome	336	Y
F087522	Metagenome	110	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335081_100837034	F008269	N/A	MLTITKYGSCFTFRRRARSNESGWWLAASFVLLSSLQVFAADPATITFSLDFPKSDPEHYSISVQSDGHAQYQCRARISQDSDDTQDYQTDFVFSESTRARIFDLAGQAHYFSGKVDAGNKKLAFTGAKKLVYQDGQRSTTAEYNYSSVTAVQQLTTLFQSVSATLEFGRRLTYDHRYQKLALDDELKRMEEEVHRGELAELPAIKPILQEIYEDQTVINVVRARALRMIEAGAASPGTR
Ga0335081_100837036	F087522	N/A	ASGAILSPPRGPCDYAMSAIVSLQALDPDKDGNIPIEAKYSETRVTSVRCALFTVDDFQKRLAALQSERVMFRVGPHGETAMKHGSDGYFKYWDGADLLRKVTQDLLQTEFAQKPVGAGDSWKPRGQFAYARDHALKALELSGADLRFRDMVAVDGKTCAWVTSQYVFSPIDLPAAGTTTGGRVIPGIGNNAVAAVLHVSLLLDPASHHVAWLHRSQTIDNKLTLASPFDGMDDPSDPEDPADEDAQNPVPDRASRRSDNPGRYPLMTFHFQEEARARLLPDQRAAEWLAALKKFESTPQPESGTLPVPLTKTLLPNPVIQAAKPEVVKRTTHVIDSDSLVATPLGFTRYQKELCRDVWFCASASVGLPGDVQISEDTPLHTVYLAQSDGQEVSVALGPALDRHDAGLTEDEELQRQASYYLANYVWLASKPGIGTNFSSATLDGYPSILVNFSAEQRDMADIHGVLGLMLTPWGKIVPVSCSWDRGPSKELQSLCEKVITSVSLRR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335081_10083703

Overview

Ecosystem & Geography

Associated Families

Sequences