NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335081_11336782

Scaffold Ga0335081_11336782


Overview

Basic Information
Taxon OID3300032892 Open in IMG/M
Scaffold IDGa0335081_11336782 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)806
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016487Metagenome246Y
F093101Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0335081_113367821F016487N/ASKLIQGNQTWTQALAQAQKQPYYLVEIPDFAIAIASFSSTANVVTTLGGYGIALYGVGGYGT
Ga0335081_113367822F093101GAGMPTVSQYYPGDFYSDAARSLAWLYAQQEKLVQGWEANAMETGFPATSWPGAPCVPTTPTFIECGIVSQNDLSQFAQTACESIAVIPPGILMLGADDQQGPDGCPIDLSPIPLPYGPLFPPVLPVTAAEISAYYEQMVGDNPNGSVINGVTCPVLPGLTIYGYLFNPQQVMTKYR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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