NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335081_11474152

Scaffold Ga0335081_11474152


Overview

Basic Information
Taxon OID3300032892 Open in IMG/M
Scaffold IDGa0335081_11474152 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)755
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004392Metagenome / Metatranscriptome440N
F082398Metagenome / Metatranscriptome113N
F099394Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0335081_114741521F099394N/AKSATIKTTTIWFFSDIGFSFLTASEVVLHPTEQQSPRKSGCFQETEVSSI
Ga0335081_114741522F004392AGGAMPVNGPETIADSKTSQPVASEGRGVRAAKDVKPVIGRGAAKRRRRDRQEGSNTNGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLRKNNPAS
Ga0335081_114741523F082398N/AIYSSMSGLLRHAGLSEGTVGILPLILFAAGILLKPRTVQFIERRRKDRAAGADVGRPHVDAEEKQEIARKETVERCQ
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