NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335081_12351284

Scaffold Ga0335081_12351284


Overview

Basic Information
Taxon OID3300032892 Open in IMG/M
Scaffold IDGa0335081_12351284 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)556
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003491Metagenome / Metatranscriptome483Y
F017838Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0335081_123512842F003491GAGGMQKTYSTKGAAAKMGVSFRTLNRWLALGLIRASKVLPMGGGRTLWRWTEADIAKGRKVKAAQKPGPKADAK
Ga0335081_123512843F017838N/ADKVWHAEGGNGNGPDFARLSKECRNNVRDCLGRLEVELMAL

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