NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10000099

Scaffold Ga0335069_10000099


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10000099 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)148801
Total Scaffold Genes115 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (58.26%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035248Metagenome / Metatranscriptome172Y
F096946Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_1000009921F096946N/AVLNIPPMKRKAAKTTRETNPTLADLIATVNELTRDEQLGAYIVADLINSRKVRLQGQFEGRRVIVSD
Ga0335069_1000009954F035248N/AMAEIVAKMNEILADEWACVRALRRAESLAEEPGAREVIKRVRKDCSVSCVSLANIVRELGGRPTDIPSARFSLKLTNESLAECLDLVQSAQEHIVAEVDAVIDGVELKPCREALSLVGKLHIEDIRWLKSAMDTAG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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