NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10000129

Scaffold Ga0335069_10000129


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10000129 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)127027
Total Scaffold Genes107 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (55.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000482Metagenome / Metatranscriptome1089Y
F001063Metagenome / Metatranscriptome789Y
F010257Metagenome / Metatranscriptome306Y
F076376Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_10000129105F076376N/AMRAHVEGEFGYVRGLNTLGDPTGMTIRAQVRFTDVFLYRDGRWQAILAHESLIGGASR
Ga0335069_1000012949F001063GGAGGMETMLQGLVIVGGLTFSLATSLLIEELIFGRIAKFAFVRKPSRSKEVGLKTKN
Ga0335069_1000012951F000482N/AMQVSKTHLVIALCAGGLLLAVFLGYLNWLNNQGPVLSRSEERDPLTNMPVSITMNPLRDRTIERTAADFVKQMRDGNCRQLLADWTKDYRRKRAQFICDSETQHPLIGWNIVEWEDAPPLVILHYKGERYSTPARNATYKDLFSITEERKAAGWVVTKYDSFY
Ga0335069_1000012954F010257GAGGMAKIIEFYVPRSFRKKVEKWVPLDQYGKLILFALPQKKTA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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