NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10000138

Scaffold Ga0335069_10000138


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10000138 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)122828
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (83.16%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001021Metagenome / Metatranscriptome804Y
F002363Metagenome / Metatranscriptome567Y
F003233Metagenome / Metatranscriptome499Y
F010868Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_1000013818F003233AGGGGGMKVRQIIVLVAIFAGVWHTAAAQPKKKKIQIDAPPPESILATASTQSDVVLLDLTALKPEMPLGPQDVLKSYEIAMSLVAEKTATDISAIAQARQANQIAREQAEYLLQQTYQIAMMQYQVLSALHDVLKHDIDEATLQSKRSLKAANSDGVLMVPLPISPSGSK
Ga0335069_1000013835F010868GAGMPIQGEPKKMEPGQPTAAEHVAAASQLLKALQQKIGEHPEIGEAVNRLEMALTSLGVQTGGFL
Ga0335069_1000013836F002363N/AMNNLGVCLLIQLSLTFGVAGLLWPDKLMPIFDALMFPWSASYRMVRAHSLGAVGLALLVLVKLLAVGF
Ga0335069_1000013838F001021AGGAMKKTMLLTVLSICLSFAAGVAVAERVHDWQDLRKAHDHVQEAMREMDRARAANHYDMAGHGAKAEEHLRAAEHELTECIEAARSAR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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