NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10001106

Scaffold Ga0335069_10001106


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10001106 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43467
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (55.26%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003396Metagenome / Metatranscriptome489Y
F015508Metagenome254Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_1000110610F015508GAGMRKSLLAAAVCFLVAASAMAQSSASDHKKIDDEFVHQQFGDQFTLIPTVAPAFGDLDGDGIEDVVIAARCKNPMLDQSEHNFMVIDPYNAFFGYGNPTVTTTFSEGDPALRGLVMLIIHGDGKDAWRSDKPKAKYVVVNLPYKAIYVRKFRLKKKNIEALYVEEAGNLGTSGAVFFDGKKFQYVPMGGDMQ
Ga0335069_100011063F003396N/AMPKKRKKKRFSAATVVREMARERVGSPKPSHAVPAKTTKPEKHKRTLGKLLSEE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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