NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10143066

Scaffold Ga0335069_10143066


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10143066 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2971
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021579Metagenome / Metatranscriptome218Y
F076423Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_101430661F076423GAGGMAKRKSAAAQTTRSSYTARRYPGLQGKVVDYLSHSIDDGTLCVNVCFNDKTLFSLRFACDISIVGADLSDWKT
Ga0335069_101430663F021579AGGAGMQKAHLYEAILLVNRGIDDAVRGLERLKRAKNSGLTVPYIDEKLTLFEMHRALFNGFFCNNIEGSEQQDEMRFAKLHRVHEKRMLDEVQVYRDIQAVEEARRLEGKAPKVRFLTNEEQLAWERQYPKPLVDLGDEGQRQQGGQK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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