NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10386541

Scaffold Ga0335069_10386541


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10386541 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1645
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017431Metagenome240Y
F041547Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_103865411F041547GAGGMISASEIQALLLGSGGFIGTCMAGVGAYRLFSAATRGVLRVPTSLEKGAECLERAVEAVETHNAVRQQVMELKALLMATREEILKIGAEREQIGRELRLMSRKIEGFSCYAQDEIK
Ga0335069_103865412F017431GAGGMSKVKTKSEQEFDRTEILRYLNECGLQPVTPKSILIYLDDCLRPVSLSAVEFHLRYMRDRGWVELGIEKKVGTSETIRWTRITANGVDEYDRRCMALGEAK
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