NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10000004

Scaffold Ga0335074_10000004


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10000004 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)658676
Total Scaffold Genes579 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)478 (82.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001645Metagenome / Metatranscriptome658Y
F003491Metagenome / Metatranscriptome483Y
F033135Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_10000004109F003491AGGAGGMQKTWSTAGAARKIGVGLRTLNRWLAHGKIKPSVAVPMGGGRTLWRWTDADIAKGRKVKAAQRPGPKVGAR
Ga0335074_10000004303F033135GGAGGMARAVEKESKKPYAPPTLTVYGTVHELTKKVGLARSLDGGRFPRVRTAI
Ga0335074_10000004410F001645AGGAGLSLLKAPSKQPKTTNLQVRLEEEVRRNLDRYAEFIGANASYVVSEALKLLFKRDDEFKHWLTDHPTKIEEQTLEGDVLTKTA
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