NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10000017

Scaffold Ga0335074_10000017


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10000017 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)362257
Total Scaffold Genes354 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)241 (68.08%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022920Metagenome212Y
F046483Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_10000017209F022920GAGGVPDAVHELLVTEVGLAKLGARQISAEEAAQVPHNRHAIVCNPRAGASPGRRRLLIGATDGGRVLTLVIEQTVEPTSWLIVTGWNATAAERTIMESNR
Ga0335074_1000001788F046483AGCAGGMLRLVLRPFGYLAFVIALGALSATAWVLGERNDLGFFAGRLARTMWSYREVTRRGIQMAWLAWAALLGLALSPLDPLTTRWDEVVLVALALAVLWRRFFAGRQAGR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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