NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10000025

Scaffold Ga0335074_10000025


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10000025 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)301978
Total Scaffold Genes265 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)181 (68.30%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000036Metagenome / Metatranscriptome4352Y
F000228Metagenome / Metatranscriptome1519Y
F000838Metagenome / Metatranscriptome866Y
F001102Metagenome / Metatranscriptome777Y
F001511Metagenome / Metatranscriptome680Y
F001520Metagenome / Metatranscriptome679Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_10000025120F001511GGAMFEDADGLEVFVNPERVIWIREYSKQMTEISCGHEDKFTVRLAPAHAVAALGRPAR
Ga0335074_10000025127F001520GGAGGMNAIKFLFAAYIATWVIHGVYVGTLVRRFGRLRRELKELGKGK
Ga0335074_10000025180F000036N/AMWYGPLAIFKLANSLDCNVLLVTLEGLQIALWRHDLRAGSTAATSRLRNPRAKPAMAYKEIFWMACDSTEQLRAEYGPFHTRDEAESEAKKLGFGYLLRYEHILDENEEIKEVRCIFVELPGAVPVGREAARITLHTRCATCGESAAHEKGWQAEVWADIHEFEHSRHHVRLFEHARGKGLKEICGWRG
Ga0335074_10000025197F000228N/AMFLIPCSCGTTFAVAENYDQRGTAWSRYMACPGCGKRHDPKNRLLQMGFQREGYWKVDAC
Ga0335074_1000002543F000838AGGCGGMRSMAGRAVRIISRVVFFLCASVSFVTAAPYVMLRGADLPVQSEWILFVIALALVGALNLAAALLPRSWIARLRRRDRDRDRDNDRLFSSPLKLLGGFAAIFYLVAVLAYFAPHRWNLDPQLMLALCPMYFVKMTIDPSSVAVFFVLAPMNAAVYGALGSALGYALLTFRGRR
Ga0335074_1000002565F001102AGGAGMVPGVKKQIDVARLTADVAAAKVELLSAQCAADRIRLQYSPQEVAAHGDRESLKRALASAEALYRFFSQIEAHFKNEEGAGNRPR
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