NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10000096

Scaffold Ga0335074_10000096


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10000096 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)155035
Total Scaffold Genes153 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (30.72%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021370Metagenome219Y
F059554Metagenome133Y
F096088Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_10000096130F059554GGAMSCPQPGSSALFLRMKKFQADFLSMACCLALLAAWLLAAPTGLAADTTNAPSSEPFDFAKPKLLTATLYAIGSDEQNVLYTFRRTATRSNNIVHVERQFIATNGSVAAVEKIVYDSGRLVSYEMQEFQAQVSGAIRIAPDPKNPARQQLIISYGPGLTPPPGAAESLPPNTVIDDTLYPFMLAHWDDLMRGKAVKFHFVSLDRKRTYEFRLVKTAEFVRDHQTVEQIKMEAVSFLVAEFINPIILTVEKASPHHILSYLGRTTPRVKKGKAWKYLDAETVYHWS
Ga0335074_1000009659F096088GGAGMIPVKIQCGCGQRYAFDIEPVCGRMPGRVACPVCGMDGTRVANEIIAFTLAAELSKHHFSRESVMVCAVIGCLLAGVAGVVKALNMTGGFDVLLCLLGATAAFGTALCVYLWKH
Ga0335074_1000009676F021370N/AMRIFLLFLFVFVSATGFAQSSSRFTITRSVIAGGGTTFSSGARFQLGSTVAQPLAAVPSSARFSIQGGFWIRPAPIFFAPTAVNGNFMVSIQSEPGENYIVSYANSLSSQSWQTLTNITGNGSVITVTNSAPGVTSRFFRLIQQ
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