Scaffold Ga0335074_10003321

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335074_10003321

Scaffold Ga0335074_10003321

Overview

Basic Information
Taxon OID	3300032895 Open in IMG/M
Scaffold ID	Ga0335074_10003321 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21925
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (82.61%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5059	Long. (^o)	-80.2517	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048535	Metagenome / Metatranscriptome	148	Y
F088986	Metagenome	109	Y
F097226	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_100033211	F088986	GAGG	MSYQRGCLKKVRRKEGDLWVLRFRTESADGRRVENTLPVGFVRDFPNEKAA
Ga0335074_1000332111	F048535	GAGG	MTLETVKALSDAELSQVITWAQDEVKTRTERRRQEAIATIKSLAAQNNLNVSIAGTRGRPAGTKPAGKAEKPPEPIRR
Ga0335074_1000332119	F097226	AGGA	MTRCNYVALDIDPMSTYLDELFDLDILCTEEGIFINVAREE

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