NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10005947

Scaffold Ga0335074_10005947


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10005947 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16893
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000969Metagenome / Metatranscriptome818Y
F062466Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_100059474F062466AGGAGMSKIAKLALCITVTVLLLGAYFIVSAAGNTQAGPNTKNIALSALPSLNVPTNYEGLRSNFVTAYTCSPYCALGAGFTIEDNVRFQCGSTGASTCTLVVNSFATSSGGGVTNDLRALCLVLDGYIVGACAYDGEDLADGTYSAVNAINSVNNIPVGNHTAFMLFYSTYGDDFFTFTNQYNVYKP
Ga0335074_100059477F000969GAGGMINDDVVKCPLCGGFTHIENPDLLSALKEPRIREQVEQYISQLLKSPVDDLASVGTTQAGRDFQKDVHSWNPCVPMWRRSPKE
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