NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10014497

Scaffold Ga0335074_10014497


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10014497 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11051
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002013Metagenome / Metatranscriptome604Y
F016480Metagenome / Metatranscriptome247Y
F039579Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_100144971F016480AGGAGMNQQLGEYRFARIEAENITRARLEAQFKDGISGREELEKVIEQLLSTEATCTPWRKSELEQIGSRDGTRIAALEFYWTHRRRLPTVAESR
Ga0335074_100144972F039579AGGAGMLDTINDLLSSKKIPQLDEVQMSALLQHLFKIRTRALRFEVAEVVYRFDHDHPNAQDLFLACTLPSAQIAAQRKAAKLFVYPSDWQIEVMYDGAVGAAIEMFRTNTPLADVPNAFRRYLARAMSSGMLRAYFRREENSGIRCVGDVSTVRTRKTIVPNIIEREVIAGELLEQVTNWPYLRPPLRAMLQCIAALGPDFALKEHAYTASGDPDKWKREWHRRPILDPDAIAEAMGIPKQDVHRYLCQARVILRQVFNPDGRLFLIH
Ga0335074_100144977F002013AGGAMEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSLINLQFMLEMRKLEEDDESRFEEEYNVWLSDEPLTNDEICGLMRTVERERKLEGKPPLVQFLPRRKNPEEARKANERAHSSRKPNGPLPSAQRPTNKPPESAHE
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