NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10140442

Scaffold Ga0335074_10140442


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10140442 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3081
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004074Metagenome / Metatranscriptome454Y
F093108Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_101404422F093108AGGAGMNTRNNGIRGWRARVLDYTPFPDLPDIAKKGPRGWWLSQPERPGMQRWIPPWAYRHLRFYGVGHISGGTVLAAAGVVCLSYGVSGWAAFFLVLGALNLAGGSWYLTVSRSGSART
Ga0335074_101404423F004074AGGAMTALLTHEGAQAPTTELATPPGHGWLREAFHRIHLTIQEMNYASRRVVELQAPWIVDEQWHRS

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