NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335075_10005252

Scaffold Ga0335075_10005252


Overview

Basic Information
Taxon OID3300032896 Open in IMG/M
Scaffold IDGa0335075_10005252 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20151
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (86.96%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021579Metagenome / Metatranscriptome218Y
F076423Metagenome / Metatranscriptome118Y
F103597Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0335075_1000525211F021579AGGAMQKAHLYEAIHLVNRGIDDAVRGLERLKRAKGSGLTAPYIDEKLTLFEMHRALFNGFFCNNVEVAEQQDEFRFAKLHRVHEKRMLDEVQVYRDVQAVEEARRLEGKAPKVRFFSSEEQLAWERQYPKPSVDQSDEGQRRQGGQK
Ga0335075_100052527F103597GGAGVPHQPFRGQAAERRRTTLLLFYSVAVLSVIAVTLAGGTPALRTPLRALAVAGTVAAILLLLRFLRSNDEHERLINYRALTFAFVGTLMFSAAVGFLQSFGFHPVSWLGIPPVMIILWSFGLILYSWRYR
Ga0335075_100052529F076423GAGMAKRKSRAEQTTRSRYTARRYPGLQGKVVDYVSHSIDDGTLCVNVCFNDKTLFSLRFACDISIVGADLSDWKTGNYEMIHEYMKPIPR
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