NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335072_10042888

Scaffold Ga0335072_10042888


Overview

Basic Information
Taxon OID3300032898 Open in IMG/M
Scaffold IDGa0335072_10042888 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6162
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054509Metagenome139N
F072976Metagenome120Y
F079487Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0335072_100428881F072976N/AEPGAARAELNRLRSLGQISADAPHWLNAAKPAPYYLRLGDAIVLPLAPHADGWIATTCVTQRTLTPTRRSAKSARKASLRAGKRAQRRTEF
Ga0335072_100428883F054509AGGGGGVSEPLISTQTANEQLRRADERWAAAVRGLRPYAERLRELADAAEHESRALLLSDLANVKWNPRPGARNIRLAYEVEEGSGRQGPRELWAKFDRGVKQLGIALEGESIRAIADAFSRLSADTREIANAIAVPADEQDPAVKKRAG
Ga0335072_100428886F079487AGGAGVEPPDSKATGGATTRRHLPSLLVHLRSNIVAYVALAVAVGSGGSYALAATTSNGTIAVCVDNGSGVMHVAKHPRCGHGQSRIGLSSALDRPTVGALVAPNGGVTSGLGLSIGHAGAGVYDVTITAAKCRGALNNAPVVSVNESQPPGGWGTGVFPVAWTMPTGFRGNTFTVFTGVVVAGAFQPRDEAFNLADSCEFAPGT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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