NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335072_10056552

Scaffold Ga0335072_10056552


Overview

Basic Information
Taxon OID3300032898 Open in IMG/M
Scaffold IDGa0335072_10056552 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5238
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010178Metagenome / Metatranscriptome307Y
F021584Metagenome / Metatranscriptome218Y
F069066Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0335072_1005655211F021584GGAMFDDQFERQFFSYVVDVNVAGNAVQTPVQLQILSDADFEWWWSMVFRTSGSLKLLMKEQGTGRDFIGTTASGTGSTFNGVNIDLWAGTAVANAAFPLAVPYVMPATRVYSFLLTDSSGETNVVEIVLNGFKLWPRPESTQSAQSSMQPTSSSGQ
Ga0335072_1005655212F010178N/AVAGQLEYLVQPVYDYYGVAVATALTKQQLFAQPIGASYTPAGGSAFFKTLYHTNLVQPGMLDAPKKLLVKAVAVIVRSDVALPDLTAFIGQTLAQLTISGKDYWTALVSKCPAGGGAFGTAVDTQTLASGGTMASGFSNGWPSAENVATITDPMPQIPGLDPMEPILGQLIEQGQNFAVVLDPTITGSAAYTTLAASPATQFVGEGIVAHVYCEGILARAIL
Ga0335072_100565525F069066GAGMGLIDFPDPVSMFEGAKNAGLEREVVNTLASSAYSSWISLMWRAGNARVIVWLGLGAALKDAATSAYLSLRELEKKNFLVLTVPQDLLTADNLSRFQTEQMTK
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